mssm.src package

Subpackages

• mssm.src.python package
  • Submodules
  • mssm.src.python.compare module
    • compare_CDL()
  • mssm.src.python.constraints module
    • ConstType
      • ConstType.DIFF
      • ConstType.DROP
      • ConstType.QR
    • Constraint
      • Constraint.Z
      • Constraint.type
  • mssm.src.python.exp_fam module
    • Binomial
      • Binomial.D()
      • Binomial.V()
      • Binomial.deviance()
      • Binomial.init_mu()
      • Binomial.llk()
      • Binomial.lp()
    • Binomial2
      • Binomial2.get_resid()
      • Binomial2.init_coef()
      • Binomial2.init_lambda()
      • Binomial2.llk()
      • Binomial2.lp()
    • Family
      • Family.D()
      • Family.V()
      • Family.deviance()
      • Family.init_mu()
      • Family.llk()
      • Family.lp()
    • GAMLSSFamily
      • GAMLSSFamily.get_resid()
      • GAMLSSFamily.init_coef()
      • GAMLSSFamily.init_lambda()
      • GAMLSSFamily.llk()
      • GAMLSSFamily.lp()
    • GAMMALS
      • GAMMALS.get_resid()
      • GAMMALS.init_coef()
      • GAMMALS.llk()
      • GAMMALS.lp()
    • GAUMLSS
      • GAUMLSS.get_resid()
      • GAUMLSS.init_coef()
      • GAUMLSS.llk()
      • GAUMLSS.lp()
    • GENSMOOTHFamily
      • GENSMOOTHFamily.gradient()
      • GENSMOOTHFamily.hessian()
      • GENSMOOTHFamily.init_coef()
      • GENSMOOTHFamily.init_lambda()
      • GENSMOOTHFamily.llk()
    • Gamma
      • Gamma.D()
      • Gamma.V()
      • Gamma.deviance()
      • Gamma.llk()
      • Gamma.lp()
    • Gaussian
      • Gaussian.D()
      • Gaussian.V()
      • Gaussian.deviance()
      • Gaussian.llk()
      • Gaussian.lp()
    • Identity
      • Identity.dy1()
      • Identity.dy2()
      • Identity.f()
      • Identity.fi()
    • InvGauss
      • InvGauss.D()
      • InvGauss.V()
      • InvGauss.deviance()
      • InvGauss.llk()
      • InvGauss.lp()
    • LOG
      • LOG.dy1()
      • LOG.dy2()
      • LOG.f()
      • LOG.fi()
    • LOGb
      • LOGb.dy1()
      • LOGb.dy2()
      • LOGb.f()
      • LOGb.fi()
    • Link
      • Link.dy1()
      • Link.dy2()
      • Link.f()
      • Link.fi()
    • Logit
      • Logit.dy1()
      • Logit.dy2()
      • Logit.f()
      • Logit.fi()
    • MULNOMLSS
      • MULNOMLSS.get_resid()
      • MULNOMLSS.llk()
      • MULNOMLSS.lp()
    • Poisson
      • Poisson.D()
      • Poisson.V()
      • Poisson.deviance()
      • Poisson.init_mu()
      • Poisson.llk()
      • Poisson.lp()
    • PropHaz
      • PropHaz.get_baseline_hazard()
      • PropHaz.get_survival()
      • PropHaz.gradient()
      • PropHaz.hessian()
      • PropHaz.init_coef()
      • PropHaz.llk()
    • est_scale()
  • mssm.src.python.formula module
    • Formula
      • Formula.build_penalties()
      • Formula.encode_data()
      • Formula.get_coding_factors()
      • Formula.get_data()
      • Formula.get_depvar()
      • Formula.get_factor_codings()
      • Formula.get_factor_levels()
      • Formula.get_ir_smooth_term_idx()
      • Formula.get_lhs()
      • Formula.get_linear_term_idx()
      • Formula.get_n_coef()
      • Formula.get_notNA()
      • Formula.get_penalties()
      • Formula.get_random_term_idx()
      • Formula.get_smooth_term_idx()
      • Formula.get_subgroup_variables()
      • Formula.get_term_names()
      • Formula.get_terms()
      • Formula.get_var_map()
      • Formula.get_var_maxs()
      • Formula.get_var_mins()
      • Formula.get_var_mins_maxs()
      • Formula.get_var_types()
      • Formula.has_intercept()
      • Formula.has_ir_terms()
    • VarType
      • VarType.FACTOR
      • VarType.NUMERIC
    • lhs
    • reparam()
  • mssm.src.python.gamm_solvers module
    • Fit_info
      • Fit_info.K2
      • Fit_info.code
      • Fit_info.dropped
      • Fit_info.eps
      • Fit_info.iter
      • Fit_info.lambda_updates
  • mssm.src.python.penalties module
    • LambdaTerm
      • LambdaTerm.D_J_emb
      • LambdaTerm.S_J
      • LambdaTerm.S_J_emb
      • LambdaTerm.clust_series
      • LambdaTerm.clust_weights
      • LambdaTerm.frozen
      • LambdaTerm.lam
      • LambdaTerm.rank
      • LambdaTerm.rep_sj
      • LambdaTerm.start_index
      • LambdaTerm.term
      • LambdaTerm.type
  • mssm.src.python.terms module
    • GammTerm
    • TermType
      • TermType.LINEAR
      • TermType.LSMOOTH
      • TermType.RANDINT
      • TermType.RANDSLOPE
      • TermType.SMOOTH
    • f
    • fs
    • i
    • irf
    • l
    • li()
    • ri
    • rs
  • mssm.src.python.utils module
    • REML()
    • adjust_CI()
    • central_hessian()
    • compute_REML_candidate_GSMM()
    • compute_Vb_corr_WPS()
    • compute_Vp_WPS()
    • compute_reml_candidate_GAMM()
    • correct_VB()
    • estimateVp()
    • forward_hessian()
    • sample_MVN()
    • updateVp()